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1.
Braz. j. med. biol. res ; 52(9): e8224, 2019. tab, graf
Article in English | LILACS | ID: biblio-1019569

ABSTRACT

Leishmaniasis is a neglected disease that affects a large part of the world population. Knowing the sand fly fauna of a region is of fundamental importance for guiding health surveillance actions related to the prevention and control of leishmaniasis. A total of 86 specimens of sand flies (60 females and 26 males) were collected. Using the classification proposed by Galati (2003), the following species were identified: Lutzomyia longipalpis (Lutz & Neiva, 1912), Migonemyia migonei (França, 1920), Evandromyia cortelezzi (Brethes, 1923), Ev. sallesi (Galvão & Coutinho, 1939), Nyssomyia whitmani (Atunes & Coutinho, 1939), Psathyromyia lutziana (Costa Lima, 1932), Ev. lenti (Mangabeira, 1938), Brumptomyia sp. (França and Parrot, 1921), and Pressatia sp. (Mangabeira, 1942). Using PCR with internal transcribed spacer target to identify infected sand flies, five Lu. longipalpis females were infected with Leishmania spp. Despite the small number of specimens collected, considerable species diversity was found in the study area.


Subject(s)
Animals , Male , Female , Psychodidae/classification , Psychodidae/parasitology , RNA, Protozoan/genetics , Insect Vectors/classification , Insect Vectors/parasitology , Leishmania/isolation & purification , Brazil , Leishmaniasis/transmission , Polymerase Chain Reaction , DNA, Ribosomal Spacer/genetics , Leishmania/genetics
2.
Rev. Soc. Bras. Med. Trop ; 51(4): 493-502, July-Aug. 2018. tab, graf
Article in English | LILACS | ID: biblio-957450

ABSTRACT

Abstract INTRODUCTION: Strongyloides stercoralis is an intestinal parasitic nematode that causes hyperinfection and/or a dissemination syndrome in hosts, which is often difficult to diagnose. This study aims to compare the diagnostic efficacy of four conventional methods used to diagnose strongyloidiasis with real-time polymerase chain reaction (qPCR) to detect S. stercoralis in fecal samples. METHODS: We analyzed 143 fecal samples collected from Colombian regions with varying degrees of risk for intestinal infections caused by S. stercoralis to assess the validity, performance, overall efficiency, and concordance of the qPCR using a direct stool test, modified Ritchie concentration technique, agar plate culture, and Harada-Mori technique as reference tests. RESULTS While four fecal samples were positive for S. stercoralis using conventional methods, 32 were positive via qPCR. The diagnostic sensitivity of the qPCR was 75% [95% confidence interval (CI): 20.07-100%], whereas its specificity, negative predictive value, negative likelihood ratio, and Youden's J index were 78.42% (95% CI: 71.22-85.62%), 99.09% (95% CI: 96.86-100%), 0.32 (95% CI: 0.06-1.74), and 0.53, respectively. In addition, the estimated kappa index between the qPCR and the conventional methods was 0.12 (95% CI: -0.020-0.26). CONCLUSIONS: The diagnostic sensitivity of qPCR to detect strongyloidiasis is analogous to that of conventional parasitology methods, with an additional advantage of being capable of identifying the parasite DNA at low sample concentrations.


Subject(s)
Humans , Animals , Male , Female , Adolescent , Adult , Young Adult , Strongyloides/genetics , Strongyloidiasis/diagnosis , RNA, Ribosomal, 18S/genetics , RNA, Protozoan/genetics , Feces/parasitology , Real-Time Polymerase Chain Reaction/methods , Strongyloides/isolation & purification , Sensitivity and Specificity , Middle Aged
3.
Mem. Inst. Oswaldo Cruz ; 111(11): 686-691, Nov. 2016. graf
Article in English | LILACS | ID: biblio-829250

ABSTRACT

Trypanosomatids are parasites that cause disease in humans, animals, and plants. Most are non-pathogenic and some harbor a symbiotic bacterium. Endosymbiosis is part of the evolutionary process of vital cell functions such as respiration and photosynthesis. Angomonas deanei is an example of a symbiont-containing trypanosomatid. In this paper, we sought to investigate how symbionts influence host cells by characterising and comparing the transcriptomes of the symbiont-containing A. deanei (wild type) and the symbiont-free aposymbiotic strains. The comparison revealed that the presence of the symbiont modulates several differentially expressed genes. Empirical analysis of differential gene expression showed that 216 of the 7625 modulated genes were significantly changed. Finally, gene set enrichment analysis revealed that the largest categories of genes that downregulated in the absence of the symbiont were those involved in oxidation-reduction process, ATP hydrolysis coupled proton transport and glycolysis. In contrast, among the upregulated gene categories were those involved in proteolysis, microtubule-based movement, and cellular metabolic process. Our results provide valuable information for dissecting the mechanism of endosymbiosis in A. deanei.


Subject(s)
Humans , Animals , Gene Expression Regulation/physiology , Gene Ontology , RNA, Protozoan/genetics , Symbiosis/genetics , Transcriptome/genetics , Trypanosomatina/genetics , Bacteria/growth & development , Gene Expression Profiling , Genes, Protozoan , Genome, Protozoan , Genomics , RNA, Protozoan/isolation & purification , Trypanosomatina/metabolism
4.
Mem. Inst. Oswaldo Cruz ; 110(8): 956-965, Dec. 2015. graf
Article in English | LILACS | ID: lil-769828

ABSTRACT

The class Kinetoplastea encompasses both free-living and parasitic species from a wide range of hosts. Several representatives of this group are responsible for severe human diseases and for economic losses in agriculture and livestock. While this group encompasses over 30 genera, most of the available information has been derived from the vertebrate pathogenic genera Leishmaniaand Trypanosoma. Recent studies of the previously neglected groups of Kinetoplastea indicated that the actual diversity is much higher than previously thought. This article discusses the known segment of kinetoplastid diversity and how gene-directed Sanger sequencing and next-generation sequencing methods can help to deepen our knowledge of these interesting protists.


Subject(s)
Biodiversity , DNA, Protozoan/genetics , High-Throughput Nucleotide Sequencing/methods , Kinetoplastida/genetics , Phylogeny , RNA, Protozoan/genetics , Biomarkers , Computational Biology , Databases, Genetic , DNA Barcoding, Taxonomic/trends , Environment , Kinetoplastida/classification , Kinetoplastida/cytology , Metagenomics/trends , /genetics
5.
Protein & Cell ; (12): 373-385, 2015.
Article in English | WPRIM | ID: wpr-757586

ABSTRACT

Ciliates are one of the oldest living eukaryotic unicellular organisms, widely distributed in the waters around the world. As a typical marine oligotrich ciliate, Strombidium sulcatum plays an important role in marine food webs and energy flow. Here we report the first deep sequencing and analyses of RNA-Seq data from Strombidium sulcatum. We generated 42,640 unigenes with an N50 of 1,451 bp after de novo assembly and removing rRNA, mitochondrial and bacteria contaminants. We employed SPOCS to detect orthologs from S. sulcatum and 17 other ciliates, and then carried out the phylogenomic reconstruction using 127 single copy orthologs. In phylogenomic analyses, concatenated trees have similar topological structures with concordance tree on the class level. Together with phylogenetic networks analysis, it aroused more doubts about the placement of Protocruzia, Mesodinium and Myrionecta. While epiplasmic proteins are known to be related to morphological characteristics, we found the potential relationship between gene expression of epiplasmic proteins and morphological characteristics. This work supports the use of high throughput approaches for phylogenomic analysis as well as correlation analysis between expression level of target genes and morphological characteristics.


Subject(s)
Ciliophora , Genetics , Metabolism , Phylogeny , RNA, Protozoan , Genetics , Metabolism , Transcriptome , Physiology
6.
The Korean Journal of Parasitology ; : 471-478, 2014.
Article in English | WPRIM | ID: wpr-7400

ABSTRACT

Trichomonad species inhabit a variety of vertebrate hosts; however, their potential zoonotic transmission has not been clearly addressed, especially with regard to human infection. Twenty-one strains of trichomonads isolated from humans (5 isolates), pigs (6 isolates), rodents (6 isolates), a water buffalo (1 isolate), a cow (1 isolate), a goat (1 isolate), and a dog (1 isolate) were collected in Indonesia and molecularly characterized. The DNA sequences of the partial 18S small subunit ribosomal RNA (rRNA) gene or 5.8S rRNA gene locus with its flanking regions (internal transcribed spacer region, ITS1 and ITS2) were identified in various trichomonads; Simplicimonas sp., Hexamastix mitis, and Hypotrichomonas sp. from rodents, and Tetratrichomonas sp. and Trichomonas sp. from pigs. All of these species were not detected in humans, whereas Pentatrichomonas hominis was identified in humans, pigs, the dog, the water buffalo, the cow, and the goat. Even when using the high-resolution gene locus of the ITS regions, all P. hominis strains were genetically identical; thus zoonotic transmission between humans and these closely related mammals may be occurring in the area investigated. The detection of Simplicimonas sp. in rodents (Rattus exulans) and P. hominis in water buffalo in this study revealed newly recognized host adaptations and suggested the existence of remaining unrevealed ranges of hosts in the trichomonad species.


Subject(s)
Animals , Humans , DNA, Protozoan/genetics , DNA, Ribosomal Spacer/genetics , Indonesia/epidemiology , Mammals , Protozoan Infections/epidemiology , RNA, Protozoan/genetics , RNA, Ribosomal, 18S/genetics , Species Specificity , Trichomonadida/classification
7.
Rev. Inst. Med. Trop. Säo Paulo ; 55(3): 149-154, May-Jun/2013. graf
Article in English | LILACS | ID: lil-674691

ABSTRACT

Cryptosporidium spp. and Cystoisospora belli are monoxenic protozoa that have been recognized as the causative agents of chronic diarrhea in immunocompromised individuals, especially HIV-infected subjects. The objective of this study was to evaluate the frequency of these intestinal protozoa in HIV-positive patients in the Triângulo Mineiro region of Brazil and to correlate the presence of these infections with clinical, epidemiological and laboratory data of the patients. Oocysts were detected in stool samples of 10 (16.9%) of the 59 patients studied, while Cryptosporidium spp. were present in 10.1% (6/59) and C. belli in 6.7% (4/59). The frequency of these parasites was higher among patients with diarrheic syndrome and CD4+ T lymphocyte counts < 200 cells/mm 3 , demonstrating the opportunistic characteristic of these infections. A significant association was observed between the lack of adherence to antiretroviral therapy and the presence of Cryptosporidium spp. and/or C. belli. Parasitism with Cryptosporidium spp. was more frequent in February and April, the months following the period of high rainfall. The same was not observed for C. belli. Genetic characterization of two isolates led to the identification of Cryptosporidium parvum, one of the main species associated with the zoonotic transmission of cryptosporidiosis.


Cryptosporidium spp. e Cystoisospora belli são protozoários monoxenos reconhecidos como agentes causadores de diarréia crônica em indivíduos imunocomprometidos, especialmente aqueles infectados pelo HIV. Os objetivos deste estudo foram o de avaliar a frequência destes protozoários em pacientes HIV - positivos na região do Triângulo Mineiro, Brasil, e correlacionar a presença destas infecções com dados clínicos, epidemiológicos e laboratoriais dos pacientes. Oocistos foram detectados em amostras fecais de 10 (16,9%) dos 59 pacientes estudados, sendo 10.1% (6/59) das amostras positivas para Cryptosporidium spp. e 6,7% (4/59) das amostras positivas para C. belli. A frequência destes parasitos foi maior entre pacientes com síndrome diarreica e contagem de linfócitos T CD4+ < 200 cells/mm 3 , o que demonstra o caráter oportunista destas infecções. Foi observada uma associação significativa entre a falta de aderência à terapia antiretroviral e a presença de Cryptosporidium spp. e/ou C. belli. Parasitismo por Cryptosporidium spp. foi mais frequente em fevereiro e abril, meses subsequentes ao período chuvoso. O mesmo não foi observado para C. belli. A caracterização genética de dois isolados levou à identificação de Cryptosporidium parvum, uma das principais espécies associadas com a transmissão zoonótica da criptosporidiose.


Subject(s)
Adolescent , Adult , Female , Humans , Male , Middle Aged , Young Adult , AIDS-Related Opportunistic Infections/epidemiology , Cryptosporidiosis/epidemiology , Cryptosporidium/genetics , AIDS-Related Opportunistic Infections/diagnosis , AIDS-Related Opportunistic Infections/parasitology , Brazil/epidemiology , Cryptosporidiosis/diagnosis , Cryptosporidiosis/parasitology , Cryptosporidium/classification , Feces/parasitology , Polymerase Chain Reaction , Polymorphism, Restriction Fragment Length , RNA, Protozoan/analysis , RNA, Ribosomal/analysis
8.
The Korean Journal of Parasitology ; : 497-502, 2013.
Article in English | WPRIM | ID: wpr-189492

ABSTRACT

Autophagy-related protein 8 (Atg8) is an essential component of autophagy formation and encystment of cyst-forming parasites, and some protozoa, such as, Acanthamoeba, Entamoeba, and Dictyostelium, have been reported to possess a type of Atg8. In this study, an isoform of Atg8 was identified and characterized in Acanthamoeba castellanii (AcAtg8b). AcAtg8b protein was found to encode 132 amino acids and to be longer than AcAtg8 protein, which encoded 117 amino acids. Real-time PCR analysis showed high expression levels of AcAtg8b and AcAtg8 during encystation. Fluorescence microscopy demonstrated that AcAtg8b is involved in the formation of the autophagosomal membrane. Chemically synthesized siRNA against AcAtg8b reduced the encystation efficiency of Acanthamoeba, confirming that AcAtg8b, like AcAtg8, is an essential component of cyst formation in Acanthamoeba. Our findings suggest that Acanthamoeba has doubled the number of Atg8 gene copies to ensure the successful encystation for survival when 1 copy is lost. These 2 types of Atg8 identified in Acanthamoeba provide important information regarding autophagy formation, encystation mechanism, and survival of primitive, cyst-forming protozoan parasites.


Subject(s)
Humans , Acanthamoeba castellanii/cytology , Amebiasis/parasitology , Amino Acid Sequence , Autophagy , Cell Membrane/metabolism , DNA, Protozoan/chemistry , Gene Dosage , Gene Silencing , Genes, Reporter , Molecular Sequence Data , Phagosomes/metabolism , Protein Isoforms , Protozoan Proteins/genetics , RNA, Messenger/genetics , RNA, Protozoan/genetics , RNA, Small Interfering/chemical synthesis , Recombinant Fusion Proteins , Sequence Alignment
9.
Mem. Inst. Oswaldo Cruz ; 107(8): 1070-1072, Dec. 2012. ilus
Article in English | LILACS | ID: lil-660659

ABSTRACT

Trypanosomatidae is a family of early branching eukaryotes harbouring a distinctive repertoire of gene expression strategies. Functional mature messenger RNA is generated via the trans-splicing and polyadenylation processing of constitutively transcribed polycistronic units. Recently, trans-splicing of pre-small subunit ribosomal RNA in the 5' external transcribed spacer region and of precursor tRNAsec have been described. Here, we used a previously validated semi-nested reverse transcription-polymerase chain reaction strategy to investigate internal transcribed spacer (ITS) I acceptor sites in total RNA from Leishmania (Leishmania) amazonensis. Two distinct spliced leader-containing RNAs were detected indicating that trans-splicing reactions occur at two AG acceptor sites mapped in this ITS region. These data provide further evidence of the wide spectrum of RNA molecules that act as trans-splicing acceptors in trypanosomatids.


Subject(s)
DNA, Ribosomal Spacer/genetics , Leishmania mexicana/genetics , RNA Precursors/genetics , RNA Splice Sites/genetics , RNA, Protozoan/genetics , Reverse Transcriptase Polymerase Chain Reaction , Trans-Splicing/genetics
10.
Biomédica (Bogotá) ; 32(3): 418-429, jul.-set. 2012. ilus, graf, tab
Article in Spanish | LILACS | ID: lil-663712

ABSTRACT

Introducción. Los mecanismos de resistencia al antimonio pentavalente conocidos hasta el momento, se han descrito ampliamente en cepas del subgénero Leishmania, pero poco se sabe sobre las proteínas involucradas en los mecanismos de resistencia presentes en cepas del subgénero Viannia, como Leishmania panamensis. Objetivo. Identificar proteínas diferencialmente expresadas entre las cepas de L. panamensis (UA140), sensible y resistente al antimonio pentavalente, y analizar el posible papel de estas proteínas en mecanismos de resistencia. Materiales y métodos. Las proteínas de las cepas, sensible y resistente al antimonio pentavalente, se compararon usando electroforesis bidimensional. Las proteínas con aumento de la expresión fueron aisladas e identificadas por espectrometría de masas mediante MALDI-TOF/TOF (Matrix Assisted Laser Desorption Ionization/Time of Flight). La expresión del ARNm de cinco de estas proteínas se cuantificó mediante PCR en tiempo real. Resultados. Los geles bidimensionales de las cepas sensible y resistente detectaron 532±39 y 541±43 manchas proteicas. Se encontraron 10 manchas con aumento de la expresión en la cepa resistente, identificadas como proteínas de choque térmico (Hsp60 mitocondrial, Hsp70 mitocondrial y citosólica), isomerasa de disulfuro, proteasa de cisteína, enolasa, factor de elongación 5-α, la subunidad 5-α del proteasoma y dos proteínas hipotéticas nombradas como Sp(2) y Sp(25). Conclusión. Este es el primer estudio llevado a cabo con una cepa resistente al antimonio pentavalente en L. panamensis, en el cual se han identificado proteínas que están relacionadas con el mecanismo de resistencia del parásito frente al medicamento, abriendo el camino para futuros estudios de estas proteínas como blancos terapéuticos.


Introduction. The well-known drug resistance mechanisms to pentavalent antimony have been widely described in strains of the Leishmania subgenus, but little is known about the mechanisms of resistance and the proteins associated with it in strains of the Viannia subgenus such as Leishmania panamensis. Objective. Differentially expressed proteins were identified between pentavalent antimonial sensitive and resistant L. panamensis (UA140) strains, and the role of these proteins was analyzed as possible resistance mechanisms. Materials and methods. The protein lysates of pentavalent antimony sensitive and resistant strains were separated by two-dimensional gel electrophoresis,and the protein patterns compared. The proteins identified as overexpressed were separated and analyzed using MALDI-TOF/TOF (Matrix Assisted Laser Desorption Ionization/Time of Flight). The level of mRNA expression of five of these proteins was quantified using real-time PCR. Results. On the 2-dimensional gels, 532 ± 39 protein spots were identified for the sensitive strains, and 541 ± 43 spots for the resistant strains. Ten spots were overexpressed in the resistant strain and identified as heat shock protein (Hsp60 mitochondrial, Hsp70 cytosolic and mitochondrial), disulfide isomerase, cysteine protease, enolase, elongation factor 5-alpha, the proteasome alpha-5 subunit and two hypothetical proteins named as Sp(2) and Sp(25). Conclusion. This is the first proteomic study conducted with a L. panamensis resistant strain where several proteins were identified and related with the parasite resistance mechanism to pentavalent antimony. This opens the way for future studies aimed at modulating the drug resistance or at evaluating these proteins as therapeutic targets.


Subject(s)
Antiprotozoal Agents/pharmacology , In Vitro Techniques , Leishmania guyanensis/metabolism , Meglumine/pharmacology , Organometallic Compounds/pharmacology , Protozoan Proteins/biosynthesis , Drug Resistance , Electrophoresis, Gel, Two-Dimensional , Gene Expression Regulation , Leishmania guyanensis/drug effects , Leishmania guyanensis/genetics , Proteomics , Protozoan Proteins/analysis , Protozoan Proteins/genetics , Protozoan Proteins/physiology , Real-Time Polymerase Chain Reaction , RNA, Messenger/biosynthesis , RNA, Protozoan/biosynthesis , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Subtraction Technique
11.
Mem. Inst. Oswaldo Cruz ; 107(6): 816-819, set. 2012. ilus, tab
Article in English | LILACS | ID: lil-649500

ABSTRACT

Small non-coding RNAs derived from transfer RNAs have been identified as a broadly conserved prokaryotic and eukaryotic response to stress. Their presence coincides with changes in developmental state associated with gene expression regulation. In the epimastigote form of Trypanosoma cruzi, tRNA fragments localize to posterior cytoplasmic granules. In the infective metacyclic form of the parasite, we found tRNA-derived fragments to be abundant and evenly distributed within the cytoplasm. The fragments were not associated with polysomes, suggesting that the tRNA-derived fragments may not be directly involved in translation control in metacyclics.


Subject(s)
Cytoplasmic Granules/genetics , RNA, Protozoan/analysis , RNA, Transfer/analysis , Trypanosoma cruzi/genetics , Cytoplasmic Granules/chemistry , RNA, Protozoan/genetics , RNA, Transfer/genetics
12.
Mem. Inst. Oswaldo Cruz ; 107(3): 416-419, May 2012. graf
Article in English | LILACS | ID: lil-624025

ABSTRACT

Ketoconazole is a clinically safe antifungal agent that also inhibits the growth of Leishmania spp. A study was undertaken to determine whether Leishmania parasites are prone to becoming resistant to ketoconazole by upregulating C14-demethylase after stepwise pharmacological pressure. Leishmania amazonensis promastigotes [inhibitory concentration (IC)50 = 2 µM] were subjected to stepwise selection with ketoconazole and two resistant lines were obtained, La8 (IC50 = 8 µM) and La10 (IC50 = 10 µM). As a result, we found that the resistance level was directly proportional to the C14-demethylase mRNA expression level; we also observed that expression levels were six and 12 times higher in La8 and La10, respectively. This is the first demonstration that L. amazonensis can up-regulate C14-demethylase in response to drug pressure and this report contributes to the understanding of the mechanisms of parasite resistance.


Subject(s)
Antiprotozoal Agents/pharmacology , Ketoconazole/pharmacology , Leishmania mexicana/drug effects , Leishmania mexicana/enzymology , /metabolism , Up-Regulation/drug effects , Parasitic Sensitivity Tests , Real-Time Polymerase Chain Reaction , RNA, Messenger/analysis , RNA, Protozoan/analysis , /genetics
13.
Rio de Janeiro; s.n; 2012. 94 p. ilus, tab.
Thesis in Portuguese | LILACS | ID: lil-665410

ABSTRACT

O Cryptosporidium é um parasito coccídeo reconhecido por causar diarréia em humanos e animais em todo o mundo. O gênero compreende pelo menos 20 espécies confirmadas, sendo o C. hominis e C. parvum as principais espécies causadoras de criptosporidiose em humanos. Ferramentas moleculares têm sido desenvolvidas para detectar e diferenciar espécies/genótipos e subgenótipos de Cryptosporidium. O objetivo do trabalho foi avaliar a heterogeneidade molecular de Cryptosporidium sp. obtidos de amostras clínicas provenientes dos municípios do Rio de Janeiro e de Salvador, através da PCR em tempo real e seqüenciamento automático. Foram analisadas 85 amostras, distribuídas em 3 grupos distitntos, sendo 45 delas do município do Rio de Janeiro e 40 amostras provenientes de Salvador, Bahia. Todas as amostras foram positivas para Cryptosporidium sp. pelo método de coloração de Kinyoun a frio. O ensaio da PCR em tempo real combinou uma reação multiplex para a detecção do gênero Cryptosporidium e da espécie C. parvum e uma reação simples para a detecção de C. hominis. Na detecção do gênero Cryptosporidium foram utilizados par de primers e uma sonda TaqMan desenhados a partir do alinhamento de seqüências conservadas do gene 18S rRNA de várias espécies de Cryptosporidium disponíveis no GenBank. Para a detecção das espécies C. parvum e C. hominis foram utilizados primers e sondas específicos obtidos a partir de seqüências de cada espécie disponíveis no GenBank. A detecção do gênero Cryptosporidium através da sonda 18S rRNA, na reação duplex, foi visualizada em 63 de 85 amostras totais. Destas, a sonda TaqMan específica para C. parvum detectou 6 amostras e a sonda Taqman específica para C. hominis detectou 42 amostras. Quinze amostras não puderam ser detectadas pelas sondas C. hominis ou C. parvum. Nos ensaios da PCR para o gene 18S, 31 amostras foram positivas e 27 delas sequenciadas. As análises filogenéticas confirmaram a presença de C. hominis, C. parvum e C. felis ...


Cryptosporidium is a coccidia parasite known to cause diarrhea in humans and animals worldwide. The genus comprises at least 20 confirmed species, with C. hominis and C. parvum major species that cause cryptosporidiosis in humans. Molecular tools have been developed to detect and differentiate Cryptosporidium at the species/genotypes and subtype levels. The objective of this study was to evaluate the molecular heterogeneity of Cryptosporidium sp. clinical samples obtained from Rio de Janeiro and Salvador (Bahia), through real-time PCR and automatic sequencing. We analyzed 85 samples, distributed in three distinct groups, 45 of them in the city of Rio de Janeiro and 40 samples from Salvador. All samples were positive for Cryptosporidium sp. by modified Kinyoun acid-fast staining technique. The real-time PCR procedure combined a duplex reaction for the detection of Cryptosporidium species and C. parvum and a simple reaction for the detection of C. hominis. The detection of the genus Cryptosporidium have been used a pair of primers and TaqMan probe designed from the alignment of conserved sequences of the 18S rRNA gene of several species of Cryptosporidium available in GenBank. For the detection of species C. parvum and C. hominis were used specific primers and probes derived from sequences of each species available in the GenBank. Detection of Cryptosporidium sp. by 18S rRNA probe, in the duplex reaction, was visualized in 63 of 85 total samples. Of these, the C. parvum TaqMan probe detected 6 samples and the C. hominis TaqMan probe detected 42 samples. Fifteen samples could not be detected by C. hominis or C. parvum probes. In the 18S PCR assays, 31 samples were positive and 27 of them sequenced. Phylogenetic analysis confirmed the presence of C. hominis, C. parvum and C. felis. The analysis of the phylogenetic tree obtained by Neighbor Joining showed that the sequences obtained in this study were grouped with Cryptosporidium species described ...


Subject(s)
Humans , Animals , Male , Female , Cryptosporidium/classification , Cryptosporidium/genetics , Cryptosporidium/isolation & purification , Molecular Epidemiology , Cryptosporidiosis/diagnosis , Cryptosporidiosis/parasitology , Diarrhea/parasitology , Genotype , /genetics , RNA, Protozoan/genetics , Polymerase Chain Reaction/methods
14.
Asian Pacific Journal of Tropical Biomedicine ; (12): 104-108, 2012.
Article in English | WPRIM | ID: wpr-303614

ABSTRACT

<p><b>OBJECTIVE</b>To determine the presence of Babesia bovis (B. bovis) in large ruminants in southern Punjab and its effect on hematological and serum biochemical profile of host animals.</p><p><b>METHODS</b>Blood samples were collected from 144 large ruminants, including 105 cattle and 39 buffaloes, from six districts in southern Punjab including Multan, Layyah, Muzaffar Garh, Bhakar, Bahawalnagar and Vehari. Data on the characteristics of animals and herds were collected through questionnaires. Different blood (hemoglobin, glucose) and serum (ALT, AST, LDH, cholesterol) parameters of calves and cattle were measured and compared between parasite positive and negative samples to demonstrate the effect of B. bovis on the blood and serological profile of infected animals.</p><p><b>RESULTS</b>27 out of 144 animals, from 5 out of 6 sampling districts, produced the 541-bp fragment specific for B. bovis. Age of animals (P=0.02), presence of ticks on animals (P=0.04) and presence of ticks on dogs associated with herds (P=0.5) were among the major risk factors involved in the spread of bovine babesiosis in the study area. ALT concentrations were the only serum biochemical values that significantly varied between parasite positive and negative cattle.</p><p><b>CONCLUSIONS</b>: This study has reported for the first time the presence of B. bovis in large ruminant and the results can lead to the prevention of babesiosis in the region to increase the livestock output.</p>


Subject(s)
Animals , Cattle , Alanine Transaminase , Blood , Aspartate Aminotransferases , Blood , Babesia bovis , Genetics , Babesiosis , Blood , Epidemiology , Parasitology , Blood Glucose , Buffaloes , Cattle Diseases , Blood , Epidemiology , Parasitology , Cholesterol , Blood , India , Epidemiology , L-Lactate Dehydrogenase , Blood , Polymerase Chain Reaction , RNA, Protozoan , Blood , RNA, Ribosomal , Blood , Surveys and Questionnaires
15.
Asian Pacific Journal of Tropical Medicine ; (12): 29-32, 2012.
Article in English | WPRIM | ID: wpr-819834

ABSTRACT

OBJECTIVE@#To determine tick infestation of domestic ruminants and their infection to ovine theileriosis in northern Iran.@*METHODS@#About 425 domestic ruminants in Ghaemshahr city in northern Iran were inspected for tick infestations. Twenty tick specimens (13 females and 7 males) of Rhipicephalus sanguineus (R. sanguineus), the most common tick in the study area, were tested by PCR amplification against 18s rRNA genome of Theileria spp using specie specific primers and then the PCR products were sequenced for species identification by comparison with data base available in GenBank.@*RESULTS@#About 323 ticks were collected from 102 animals (88 sheep, 12 goats and 2 cattle). The prevalence of ticks infesting animals was R. sanguineus (82.35%), Rhipicephalus bursa (R. bursa) (0.3%), Ixodes ricinus (I. ricinus) (15.2%), Boophilus annulatus (B. annulatus) (1.2%), Haemaphysalis punctata (H. punctata) (0.3%) and Haemaphysalis numidiana (H. numidiana) (0.6%). Eleven (55%) tick specimens were PCR positive against genome of Theileria ovis (T. ovis). Sequence analysis of the PCR products confirmed presence of T. ovis in one R. sanguinus.@*CONCLUSIONS@#This is the first report of tick infection to T. ovis in Iran. Due to dominant prevalence of R. sanguineus as well as its infection to T. ovis, it is postulated this tick is the main vector of ovine theileriosis in northern Iran.


Subject(s)
Animals , Female , Base Sequence , Gene Amplification , Goat Diseases , Diagnosis , Epidemiology , Goats , Iran , Epidemiology , Polymerase Chain Reaction , RNA, Protozoan , Rhipicephalus sanguineus , Genetics , Sensitivity and Specificity , Sheep , Sheep Diseases , Diagnosis , Epidemiology , Theileria , Genetics , Theileriasis , Diagnosis , Epidemiology , Tick Infestations , Tick-Borne Diseases , Diagnosis , Ticks
16.
Rev. Soc. Bras. Med. Trop ; 44(4): 508-510, July-Aug. 2011. graf, tab
Article in English | LILACS | ID: lil-596603

ABSTRACT

INTRODUCTION: Evidence suggests that giardiasis is a zoonotic disease. The present work aimed to evaluate the genetic identity of Giardia duodenalis isolated from human and dog fecal samples from Belo Horizonte. METHODS: Human and dog fecal samples were cultured for isolation of G. duodenalis. To determine the genotype of the isolates, primers that amplify a specific region in rRNA of the protozoan were used. RESULTS: Two G. duodenalis isolates were obtained, which belong to the subgroup A genotype. CONCLUSIONS: These findings suggest that the transmission of giardiasis follows a zoonotic pattern.


INTRODUÇÃO: Evidências sugerem que a giardíase é uma doença zoonótica. O presente trabalho tem como objetivo avaliar a identidade genética da Giardia duodenalis isolada de fezes humanas e de cães de Belo Horizonte. MÉTODOS: Amostras de fezes humanas e de cães foram cultivadas para isolamento de G. duodenalis. Para determinação do genótipo dos isolados, foram usados oligonuclotídeos que amplificam regiões específicas do gene para rRNA. RESULTADOS: Dois isolados de G. duodenalis foram obtidos, os quais apresentaram o genótipo do sub-grupo A. CONCLUSÕES: Estes dados sugerem que a transmissão da giardíase segue um padrão zoonótico.


Subject(s)
Animals , Dogs , Humans , Feces/parasitology , Giardia/genetics , Giardiasis/parasitology , Dog Diseases/parasitology , Genotype , Giardia/classification , Giardia/isolation & purification , Giardiasis/veterinary , RNA, Protozoan/genetics , RNA, Ribosomal/genetics , Sequence Analysis, RNA
17.
Mem. Inst. Oswaldo Cruz ; 106(3): 257-266, May 2011. ilus
Article in English | LILACS | ID: lil-589032

ABSTRACT

Trypanosoma cruzi, a protozoan parasite that causes Chagas disease, exhibits unique mechanisms for gene expression such as constitutive polycistronic transcription of protein-coding genes, RNA editing and trans-splicing. In the absence of mechanism controlling transcription initiation, organized subsets of T. cruzi genes must be post-transcriptionally co-regulated in response to extracellular signals. The mechanisms that regulate stage-specific gene expression in this parasite have become much clearer through sequencing its whole genome as well as performing various proteomic and microarray analyses, which have demonstrated that at least half of the T. cruzi genes are differentially regulated during its life cycle. In this review, we attempt to highlight the recent advances in characterising cis and trans-acting elements in the T. cruzi genome that are involved in its post-transcriptional regulatory machinery.


Subject(s)
Gene Expression Regulation, Developmental , RNA Processing, Post-Transcriptional , RNA, Messenger , Transcription, Genetic , Trypanosoma cruzi , Genome, Protozoan , Oligonucleotide Array Sequence Analysis , RNA, Protozoan , Trans-Splicing , Trypanosoma cruzi/growth & development
18.
Mem. Inst. Oswaldo Cruz ; 106(3): 301-307, May 2011. ilus, tab
Article in English | LILACS | ID: lil-589038

ABSTRACT

A new trypanosomatid species, Blastocrithidia cyrtomeni, is herein described using morphological and molecular data. It was found parasitising the alimentary tract of the insect host Cyrtomenus bergi, a polyphagous pest. The morphology of B. cyrtomeni was investigated using light and transmission microscopy and molecular phylogeny was inferred from the sequences of spliced leader RNA (SL rRNA) - 5S rRNA gene repeats and the 18S small subunit (SSU) rRNA gene. Epimastigotes of variable size with straphanger cysts adhering to the middle of the flagellum were observed in the intestinal tract, hemolymph and Malpighian tubules. Kinetoplasts were always observed anterior to the nucleus. The ultrastructure of longitudinal sections of epimastigotes showed the flagellum arising laterally from a relatively shallow flagellar pocket near the kinetoplast. SL RNA and 5S rRNA gene repeats were positive in all cases, producing a 0.8-kb band. The amplicons were 797-803 bp long with > 98.5 percent identity, indicating that they originated from the same organism. According to the sequence analysis of the SL-5S rRNA gene repeats and the 18S SSU rRNA gene, B. cyrtomeni is different from all other known species or isolates of Trypanosomatidae. Both analyses indicate that among known species, it is most closely related to Blastocrithidia triatomae.


Subject(s)
Animals , DNA, Protozoan , Hemiptera , RNA, Protozoan , RNA, Spliced Leader , Trypanosomatina , Base Sequence , Colombia , Hemiptera , Microscopy, Electron , Molecular Sequence Data , Phylogeny , Trypanosomatina , Trypanosomatina , Trypanosomatina , Trypanosomatina/ultrastructure
19.
Indian J Med Microbiol ; 2011 Apr-June; 29(2): 141-146
Article in English | IMSEAR | ID: sea-143797

ABSTRACT

Purpose: The aim of the present study was to evaluate the use of touchdown polymerase chain reaction (TD-PCR) for the detection of Entamoeba histolytica in liver pus samples obtained from patients with a clinical diagnosis of amoebic liver abscess (ALA) using small-subunit rRNA (SSU rRNA) as the target gene. Materials and Methods: Microscopic examination in vitro culture and serological test for the detection of E. histolytica in 67 pus samples obtained from ALA patients was performed. Molecular studies were carried out by both conventional PCR and TD-PCR targeting the SSU rRNA gene using the same sets of primers and the results were compared. Results: TD-PCR detected the presence of E. histolytica in 86.5% of the liver pus samples within 2.5 h as compared with 82.08% by conventional PCR within 3.5-4 h. Conclusion: TD-PCR assay may serve as a relatively better detection method for E. histolytica over conventional PCR with respect to the turnaround time, increased sensitivity, specificity and yield.


Subject(s)
Clinical Laboratory Techniques/methods , DNA Primers/genetics , Entamoeba histolytica/genetics , Entamoeba histolytica/isolation & purification , Humans , Liver Abscess, Amebic/diagnosis , Liver Abscess, Amebic/parasitology , Parasitology/methods , Polymerase Chain Reaction/methods , RNA, Protozoan/genetics , RNA, Ribosomal, 18S/genetics , Sensitivity and Specificity , Suppuration/parasitology , Time Factors
20.
Mem. Inst. Oswaldo Cruz ; 106(2): 190-193, Mar. 2011. graf, tab
Article in English | LILACS | ID: lil-583944

ABSTRACT

The parasitic protozoan Leishmania (Leishmania) amazonensis alternates between mammalian and insect hosts. In the insect host, the parasites proliferate as procyclic promastigotes andthen differentiate into metacyclic infective forms. The meta 1 gene is preferentially expressed during metacyclogenesis. Meta 1 expression profile determination along parasite growth curves revealed that the meta 1 mRNA level peaked at the early stationary phase then decreased to an intermediate level. No correlation was observed between meta 1 expression and infectivity. Conversely, infectivity correlated with the increase of apoptotic cells in the late stationary phase.


Subject(s)
Animals , Mice , Gene Expression Profiling , Genes, Protozoan , Leishmania mexicana , RNA, Messenger , RNA, Protozoan , Leishmania mexicana , Leishmania mexicana , Mice, Inbred BALB C , Reverse Transcriptase Polymerase Chain Reaction
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